NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1001641

Scaffold Ga0208898_1001641


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1001641 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14498
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F015852Metagenome / Metatranscriptome251Y
F045065Metagenome153N
F068776Metagenome / Metatranscriptome124N
F074810Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0208898_100164112F074810N/ALINISRNTANDVALTLTEKGTATYYLFKFQSDNTEAVEYCVATDSSLYPERFNKFTITETSTPDNLNAEVELPTEGQWRYFVYANSSSSNLDPTGLTELESGIVKVTGTTTPVTTYSGGNSNYVVYGS
Ga0208898_10016412F068776N/AMNYYYYQDEAVRTEIDELLQQNATIQSNLGTESTAEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR
Ga0208898_10016413F015852AGAAGMDWRAHLISVVVAFILGVIVAWQGCGSEPQTVTIEKPIPQIQYVDRWKVDTVRFVRRELITRYDTIYSEKIVTRLDTLLLIDTVSIVQTWLTEVANYDTTISDVRVKWSNYQNRTENLTVQYKRKEQRFSVGLHGLVGVQSDFIQNTKPMFGVGLHGSIKKTYISANYGYNGQHFVGVGVGRNIISR
Ga0208898_10016415F006492AGAAGGMDAILEALASYGIAGIFLAVLVYYLNKLTDIHRDERKEWQVANDKHVEKFSDVIAENTKALVEMRGELKENRCKM
Ga0208898_10016418F045065N/AMTESQKLIGTRGCKLLTGTGALTGLKGYAFITQEDTVLTTFEVDGVDALAAFGLTGATLKAGAYIVVPSGDAITAITMSSGSVIIYNQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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