Scaffold Ga0208904_1032119

Overview

Basic Information

• Taxon OID: 3300025669
• Scaffold ID: Ga0208904_1032119
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F075591	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208904_10321191	F039448	N/A	TIRAWQSLEADGSWKENPDRTFPMIDVRCSPARTDDNESTQQVECAILMGTNTDDDKSHAFISSMYEAVQGVCDTLFSQFRSGVFTGEEIAYFLAKVVEDTSTDAFQFGGFTFSDGLAPSDDGGINMIGIMMVVHYGRSDF
Ga0208904_10321193	F075591	AGG	MQDLAKLSELAEAEIESLRADGIDLTPAEIIEINALGWAVESPETRRLLARGAPVACGGVYLWPMSLYAQDWFNRVGCKLAGNKQQTFALAYAMAHGRDDGEPLAIDGRIAEKTVKQWSKSLKCTFGELNVAISQVLQQEEDAEQPPEETGGMTMGDFSAFLASACGGDPDFWERRCANGYSHAVLDCIVRQNSADGHKTMADPRIKANRALGWCTLKIKKSR