Scaffold Ga0209251_1044958

Overview

Basic Information

• Taxon OID: 3300025668
• Scaffold ID: Ga0209251_1044958
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1568
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004166	Metagenome / Metatranscriptome	450	N
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209251_10449581	F004166	N/A	QTNNSWGSYATNKETQKQEFWFTSYKTREECIADMSWQLEGEDDPNKKRISILHTKPYGCHFMSNNKWLSMYYYLVYRDEGMGCLWESSNPNVRIKYSVTLKTFENVPEQGRCILGD
Ga0209251_10449584	F007087	AGG	MKKLLLIALTIPNFVLADDFKLVCEGEESNYRNDVLENTSKASLTLQVKNDSIVIDSMTYKSKTFDYGAIKGESKYIKEDAQVILETSQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKC