Scaffold Ga0209251_1004541

Overview

Basic Information

• Taxon OID: 3300025668
• Scaffold ID: Ga0209251_1004541
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8535
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073501	Metagenome	120	Y
F076625	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209251_100454120	F073501	N/A	MAKKVAVDYSVINQEAAKWCMDRGYKIYPTPIEFKNLNERTKKGIKFKLVVEFGGAKKVGTKLYTDVEWSNAIWSVYSYLYNKHGSNG
Ga0209251_10045415	F076625	N/A	MIERQVRILSDYISRQNNATWREKQAFNDLVNHCEMLDNNYKDKTLYLERLASWYIDHIFELNQEHIKEISWEFFKHILLDKLAIILNTPSQYNYNSLENNILGLDIQNGNKLKPYGSVSRASKLLIKDVIVNNTKDKYEPIKDRL