Scaffold Ga0209601_1014868

Overview

Basic Information

• Taxon OID: 3300025666
• Scaffold ID: Ga0209601_1014868
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3193
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006958	Metagenome	361	N
F030557	Metagenome	185	N
F093729	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209601_10148681	F093729	N/A	HNGISYSDIDKISQCPACGKALFLADLIFNANNQYKTKPFYTKRIYLEIATALQIPFFELYYTTEGRADNGPLESLSVRRIAPTKGELQHIDLDKWLQYLEFKVQEHIKVCQSKDYLLKRITEDNEHNKNFIRRNNYVKVLSNRS
Ga0209601_10148682	F030557	AGGAGG	MSKFYLTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLTKKEVEELLIKLSQVKVNDLPLISMKQEKFISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIQEAEQNIVRNYLYPGLDQWELLEKLESLPTEELSKIKPEQLQYPWILKKCQR
Ga0209601_10148683	F006958	GGA	MSKIEHEINQYLYVRSNIINILADAAIAERFIKAPNNKRCPSMYQMLETYYDKKDWGYHVEPTLKLRGTPKQMQNYDTAIDLLLMIDTDISEDPVLMRKISWMRANRNKWTSIGKYFGIHRTSVKRMYDNVLDKLSNKIITESVDILIKKFS