Scaffold Ga0208849_1000537

Overview

Basic Information

• Taxon OID: 3300025664
• Scaffold ID: Ga0208849_1000537
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35018
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y
F036796	Metagenome / Metatranscriptome	169	Y
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208849_100053713	F036796	AGGA	MNKPLEISPAEWKEIMQLPEIRESWGIGDRETPEQFADMVYGVKFKFSPGMAPGYVGDLYLLQGDALGEPMTLLRKDGKLIFAD
Ga0208849_10005373	F082600	AGGAG	MTSIRAVQYAAIAALSLLAACSHRVPQGTVEVIDTSLSITPRAEKAALDAVQDQISHMQRGDQLVIIPITGDAANDAGGRILRLSAPTEREAYDTDLHRFQEQAGKQFVAWVASLDTHQSRTDILGALDAARQEFTLLPNGMNRNLVVVSDFLEDDGAYRFVSASSLTNPARARELAARLREQHGFLLQGVPLCLGRLESSDFAPLSSQRKEAVQAFWTAYFAAAGEPAEIQFDGTGILADTERGCFSGKR
Ga0208849_10005376	F017934	GGAG	MNKPNTEPKPRDPDGAIRRHILARATAINGKLLARLATVADDLDAGHDLAALGGLDGIEREIQTMRSFLLLLP
Ga0208849_10005378	F074173	AGGAGG	MTTDGNAEERRMSGFESGANPAEILGFSRDSVGQSYPQHYPQVRETLGEPLGVREVARLIGCSTWTVRHRYLSQGLPHLRSGPMGKLVFYRNQVIQWILQQQKKGGR