Scaffold Ga0208795_1044025

Overview

Basic Information

• Taxon OID: 3300025655
• Scaffold ID: Ga0208795_1044025
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1347
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018366	Metagenome	235	N
F088535	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208795_10440252	F018366	AGG	VVSTPVAIISPFEQNYWDRFGEGFIASIEALTVKPQEVILVTRARVDVPSWWKVVPYWDDRIWPCVNVGVREASAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWNGGLCYGTPDQYHNLLNMGNNGMPGLAVIRRKIWLKIPYRSHKYVDWVHWCEMRSHNVEASFDSRCVWTWVRHDDALTAQPDRQAEQDVVEFCRLLKSGRVIPGEDWPPKLAE
Ga0208795_10440253	F088535	N/A	RSGWHVSWMGGPEWAANKMRSFSHQELMVDDPEGFMAENYRIGRSIRGEQLIEVQMDDSWIPWIREGKAPLSWYRRR