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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025655 Open in IMG/M |
| Scaffold ID | Ga0208795_1005237 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4982 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Chesapeake Bay, USA | |||||||
| Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010604 | Metagenome / Metatranscriptome | 301 | N |
| F054676 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208795_10052372 | F010604 | N/A | MTVGQYQLINEIDSTLPVMEQNIYAVAAIKDITYEEASKVKLKDFGLMMAELGEFNVRQLEKLKINSTVILDGRVYHLEHRPEKLTSGQLLDIINIRSKYSGEGVKVMDLLLAAISKPEGKNYGDDNLSLNERAALIRGTELDKVWNIFVFFWNLWNDYLSNTEDSLSKWMKDTLAMTREILDNDGDYSA |
| Ga0208795_10052376 | F054676 | AGGCGG | MAITIQDQPTTTYIRPAFAPIEYLLSSTSTAQPGFKIVCKVYLNPAGANTLISTQQISVRPSTTQAILSIQDVVKSFVPITYSVPNGDTVGLITNALNEFRVTFQEYYSGSLQGSVVTSNTISSLAASPKYVQFASNEWQDYQLATSATFKNLLSNFSNTIPVINAFSGANNWLKVKTDQKTQIQWLQSGASANFRVWLKTLDASFNQISLSELDLGTTSKGYFALDIGRQEASAHAWDTPIVWTNAKYYAVAIYDESTTELVSNAYLYELDDCDTNYTPYELHWLNRWGGFDSFVFDGKSNQTTEVNKTFAKYSPDRISGTSLVYTTQAQRTRAFNTATSESYSLNSRLLQDFEVSGLEDLVTSPEVYWNSEAGFVSVNVSGRTYQHAKSENGLVYSLALDMVIDNSDQRQW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |