NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208795_1005083

Scaffold Ga0208795_1005083


Overview

Basic Information
Taxon OID3300025655 Open in IMG/M
Scaffold IDGa0208795_1005083 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5076
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095148Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208795_10050831F095148N/ALFGVKEAGQLGARNELDLAYEIFTNTYIAERQNTLLRTIKKLAFYEIQKTDIEIIPLKPIDSVDLTSDIILANLTRKEIRDLINDQTGLELVEEVAAPVAPVALCSHFADDSDISHLFDSIGVSEDDYEEIGAFDIHFDSDGSPMEFATTGQGIIQRVLKAILTNPLIQASGISSALELTFPELITSIGILKDSKLIEITGEAINLTPTGKKVAEVIDVPQTEVKYKYTLRSDAPALKTESRDFCRKMMGKRKLYSKAEIELLRNDMKSSSITDVTDVWLARGGWYRKPDTETSIPYCRHIWKQVIVRKK

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