Scaffold Ga0208428_1094184

Overview

Basic Information

• Taxon OID: 3300025653
• Scaffold ID: Ga0208428_1094184
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 850
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F020816	Metagenome / Metatranscriptome	222	N
F047975	Metagenome / Metatranscriptome	149	Y
F054417	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208428_10941841	F054417	AGGAGG	MSKFNKQKTIDKIVDDFGNCRMNSYWFPYSETQIEWSSYQDVYLILHQDKTWDYAEPKHLDMYVEDLKVQDLKEYARR
Ga0208428_10941842	F020816	AGGAG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWDVYEDDLRITNVKVWEEDDENN
Ga0208428_10941843	F047975	GGAGG	MRITKEEWAENTADGMDWKDLYRIAYDVMLDSVKDMSDKEFKEYLIECGYEEEDDE
Ga0208428_10941844	F004856	AGGAGG	MSDWIEGTKPKIIEARYSAYLSWDLEELGIDWDEVEDWDLQRADLEITFKDGTKQNYENWQDLDIDYKHNFEEVL