NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208428_1012343

Scaffold Ga0208428_1012343


Overview

Basic Information
Taxon OID3300025653 Open in IMG/M
Scaffold IDGa0208428_1012343 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2950
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027833Metagenome193N
F033412Metagenome177N
F034560Metagenome174N
F055697Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208428_10123433F033412GAGMTAEIDAEFWRVLLAAWGCFAMGVAIWHYRKDLHGYGLQPVGRLLLAISPALLSAFGYHSTQAVRTVELMAQAVPVRHVGHEIEPVIADRDTILTPGGATVEYIRTNYGAERRGAGSVRVGDSQLGQRSESSGPGFASVGPSVTGSVPLPLWRP
Ga0208428_10123434F034560N/AMADQNETPQDDDSDGVEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGVFIVATCYAASLVL
Ga0208428_10123435F055697AGGCGGMRTAAAVFVFCTVLHFPVPDGWKFTIAEPPAAAQPDWYLVSFGAEWCGPCRAWKRNHLAATRQVLPVVTVDITKAPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRTAEQVRRLIPDTVPGWTRETEAAPPLPE
Ga0208428_10123437F027833N/ALTSPAGVVDAVSEQGPLRCRGRWADADGIETRTLTAPHLYFLEPVKPGKCELLILRASAMDAAEVIRQPLTVAGEGPRPPPDDQTAEIEPAPDDGEVVPIPRPDELRVVLLLDESANAAQLLAVNSLDTRIWLDDNCKAWQRWDRSAIEATGVDGAPPEFVKMWQDIGDDVPLGPQVLIAGGTSVQVRPIVDAATLLDDLRRARGE
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Institute for Fundamental Biomedical Research
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