Scaffold Ga0208428_1008923

Overview

Basic Information

• Taxon OID: 3300025653
• Scaffold ID: Ga0208428_1008923
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3558
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F028792	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208428_10089231	F028792	AGG	MSNRGDYKVRVRLTTEREVIVNADGFDDAEFKAIKEAIALVDGYDAEVLWALEHGSLSDWEK
Ga0208428_10089232	F016757	GAG	MAERTWEVKVEATTTREVIVRANTEYEAQIKAQIDMRGLVGGENTKVIWAKVIPNE
Ga0208428_10089233	F003073	AGGAG	MAKKLENMTQDERIEYWAAQREKERLNRRNRIAKLTMDQRAAVININILLDKVLDVALYPDMGGIKAVSAYDLQELSDAMETLQFQFNLRGE