Scaffold Ga0208428_1000225

Overview

Basic Information

• Taxon OID: 3300025653
• Scaffold ID: Ga0208428_1000225
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29193
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011848	Metagenome / Metatranscriptome	286	Y
F019852	Metagenome / Metatranscriptome	227	Y
F070146	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208428_100022519	F011848	AGG	MSNKTPYEIRLDLVREAREILQARAKNPEDMPTTEDVLKEAERLNEFVSKRPNER
Ga0208428_100022520	F019852	AGGAG	MPIKFKPSQTTFVKGRGTKTEHFYIKNTSTEELIDYINKGQKPKIKQKCRNELDRRGVKLVWVPVTSD
Ga0208428_10002255	F070146	AGGAG	MLNIRILGMQKEPTGLQKGHEIHDFQYRTRDVEAFEKGKKLVEEFVANLDFVPADDEFYIIDDPMQITLGEYEDTGKFPGMNTLVLQLEKLGFFAKSVNYRVAEYNPEFAREFNRAVSNDENIKEDGSIDWNFVDADLYGAEHRPNCDKEYYAQYESLAIQYDLSNGVIA