Scaffold Ga0208428_1000219

Overview

Basic Information

• Taxon OID: 3300025653
• Scaffold ID: Ga0208428_1000219
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29622
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F032990	Metagenome / Metatranscriptome	178	N
F034539	Metagenome / Metatranscriptome	174	Y
F050748	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208428_100021916	F004479	N/A	MHSGKVLVGNSGDRVYLQDNKVIKEAGVYPIKFKQQMDWLANCSHPNFIKINPISDTSFEMNRYPTWYEKICDQPLIKSLDQLDRLIHIVNDFDGYGADVDTRSYLDKLETRTGYKYDGKFDAASKWGFVHGDLTVSNILYDKDFIFIDPRGTEEQSYYDHGKLMQSFTMKYESHIYNERNPKYLKFCREAEKIMYQWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHRLFDELEINYTK
Ga0208428_10002192	F032990	N/A	MIPKLKLYAETLKPLLQWASDNPHDKDIKYTITRLIRFSSDNPKDHGIPYMYSLAALEAAKKKGITDADERLRWVRWKEQTHKGGLRDDGRKNGIFHQEHIVPVSQIAKKLYDLKDITVDNIYTVLVDNMKIAWILKEEQKTLDSVCRSGIRTPELLTSLNIHIKGFNY
Ga0208428_100021921	F050748	N/A	MKDKALAIGVSSLEFTNILCSYYPRGVKEKFDIYLFVDDTKIDLDKLSGIFEEHDLDIFKNAKIIILNDLYDYYIKKHGYEGKAKEFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDISYMWDEYEEFGIKKENLFYIRNKDKYDVMDAFNEIFESDFTLEQMNALSINAGNIIYGDDPKLEYYFERFMKHPFIHHLYFNFTGYTSWTVEQRFHHFNIHRYLAEGRKVKFTDSKDLRLMQNLDKGMKAGTPDERYLKQVTPSIIHYAIGTKKPLWLRDFLPGLSWKFDGFQYEPKYELKDILYNKDWQPPSFKSVQKKQKEFKIKSIF
Ga0208428_100021923	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTKDIFEADIDNPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGEYMASDFILENDDLQINLACTDPSLSFMEMSKEETDRAFGTESKMFEFDLLTTHVDKMKSLFNLDKEEDIFTLYIGEKGINIKGTSYDATLCHSYDSSVEHGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED
Ga0208428_100021929	F034539	N/A	MLKKTIDTAKLKVKHVLGNHTALPTYPDSEDVIFELIRDYCGKVAKEIKFTNVSLQKKYDLTDERTNEIIMTLRRDKIIDVSLSNAAYTTYEVIKNPYE