NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208134_1069503

Scaffold Ga0208134_1069503


Overview

Basic Information
Taxon OID3300025652 Open in IMG/M
Scaffold IDGa0208134_1069503 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092872Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208134_10695031F092872N/ARCLIMINLKIYKYKLVNLNKVNMTNETKKQVSPINNANSNVNLKTHLTLALKNTSSIMKVLLPKIAVSVKDLIVEYKKLTEKNTDTDDKKNQIQMKALREHCYNLVGYNRKTDPNSAFEMVCTRAVKLGLMMTDHPNKFDVDAKNSQVFVMSKIATPFIIEKKEGQKSSINKKPNTDETLVEVNTGVIDRVYNVEYGNPNTRKPKTKDDKVELTFKDVAKNFYKLFNKALDYSAKPNVKFFDLVDEETMKQLSLIDTLFQGANYKAMRNFSIDYQVSVEGELEKTSIGKNKKIA

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