Scaffold Ga0208134_1031079

Overview

Basic Information

• Taxon OID: 3300025652
• Scaffold ID: Ga0208134_1031079
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F023748	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208134_10310795	F013187	AGGAG	MITKKIKKKPKITWGWIYGDECSELWEHFGFPYPDPDDRMKIKFVKYESKEMQNG
Ga0208134_10310798	F008925	AGGAG	MTVKNKLKISEVTLNLINKLKQIDDKLNEGSGEYINIGDIIRLQDAYQEVISHFDLKKEGGIHDYGADKGKYQQFYYSNYVCHSDPKAFDPSKVEEEDDEXL
Ga0208134_10310799	F023748	AGGAGG	MSDYKYTYRFSEQTVDTRYYKVESNTKLTRCEMQDLAWSVEMKDGETFTCNEGKATYEYEVIGDDAQYQMEEGQEDLLDDDITDRT