Scaffold Ga0208134_1023721

Overview

Basic Information

• Taxon OID: 3300025652
• Scaffold ID: Ga0208134_1023721
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2256
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033962	Metagenome / Metatranscriptome	176	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208134_10237212	F085730	N/A	MNYKQENWYNDIIDRLLSHKDMHQDQFHDLLHEEIDSMVTYNSDAQRIVDDLNYDVFQENDLFGRADNINQAAYAALYELFYEGDFTYEDYLNMDND
Ga0208134_10237214	F033962	N/A	MTMTELKQYMIENKRVKVAQWNKERAGNYCGPFTAEEFNQSMAIERVKSRTRRTHSKGNLWKFNNTKDRERFTK
Ga0208134_10237217	F019651	N/A	MTTLEKFQELAKINFVESPSHADVELGELQTADGYELFYITQDVQNLNYENEVFYYKPEFDSIMDEIKNATVFKPSESTINVCVYDIEDWFDEYYMLDYIQDNMDEESFEAFTNE