Scaffold Ga0208134_1019400

Overview

Basic Information

• Taxon OID: 3300025652
• Scaffold ID: Ga0208134_1019400
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2578
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y
F040180	Metagenome	162	Y
F058131	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208134_10194001	F040180	N/A	MEYMSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLDPKPLRFATYDT
Ga0208134_10194003	F058131	N/A	MTITIKQIGKTYKVSSDNTVKVIHHHDSIVSLCGEYFKNKYTNEWLSELDVQDSYDSSKLEEENDNKYY
Ga0208134_10194004	F030052	N/A	MDNINDMNNKLQQLETLLQVHDWYYAMSDDNYYYKLGRKQYEQIWKLMDELKDNGYFTESENLYDKYSK
Ga0208134_10194007	F009491	N/A	MSNTIKNTQIKILKINNKTYLPYQLHQLPKFFDKFSTDFFNLKGYCYINLNDHSDSFNFQNFKNRLTFNKDIHYSLKR