NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208507_1047509

Scaffold Ga0208507_1047509


Overview

Basic Information
Taxon OID3300025648 Open in IMG/M
Scaffold IDGa0208507_1047509 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045530Metagenome / Metatranscriptome152Y
F075720Metagenome / Metatranscriptome118N
F086589Metagenome / Metatranscriptome110N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208507_10475091F086589N/AMEATLITLDTLLSNMEAELRTDMNINILLNQEFEPSQQGDGDEIFLSANTDVRHSLNEIGQNSQQGDGD
Ga0208507_10475092F045530GAGMIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRRHVDEEGSPRKISSGIYTRQKIQLN
Ga0208507_10475093F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRGVIKSVIKLTRRAEEMLKREVIP
Ga0208507_10475094F075720N/ALGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFENHLIYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS
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