NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208507_1038168

Scaffold Ga0208507_1038168


Overview

Basic Information
Taxon OID3300025648 Open in IMG/M
Scaffold IDGa0208507_1038168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039102Metagenome / Metatranscriptome164N
F045533Metagenome / Metatranscriptome152N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208507_10381682F045533N/AMAEKPEDNILSSDQRTVNEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIENHNPFLCHGCRKLKEEK
Ga0208507_10381683F045559N/AMDLTFENIRQTTQASELRKDVAKENYKYVKLTRISNVINSLHSTDFSNEPLMHDRMNRIHILKWKIKDVNPNWHLTDQVTLMEHQILDLLDGIDHMKPWNEIGNKLKYMALFSIIENLRKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS
Ga0208507_10381684F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPKLVEFMTETSKVTHSDKVEPIETEEVPKPSISN
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