Scaffold Ga0208160_1043549

Overview

Basic Information

• Taxon OID: 3300025647
• Scaffold ID: Ga0208160_1043549
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056523	Metagenome	137	N
F061371	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208160_10435494	F056523	AGGA	METKQYLIKSEYDFKNKKFNAVNNCELTLQFKIMDSCCLVEIVGRYNGRNNEEFKHQIFCHKDQMIKILPNVNDQVAKVNEPVSKDRVLIDQRIGVIFEEEQKRYQLGLHGQLDLEDYLEEKKGN
Ga0208160_10435495	F061371	N/A	ALSKHGYSRSRQRIVDLSVNLQQAWENYKVIHGKTYYKELCLFVICRSSSGLRYKSIIKRSGLSGVVVHDCLSELLKEKLIYSKVINEIDNLKKGSYILYCARKK