Scaffold Ga0208160_1027652

Overview

Basic Information

• Taxon OID: 3300025647
• Scaffold ID: Ga0208160_1027652
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006619	Metagenome / Metatranscriptome	368	Y
F015987	Metagenome / Metatranscriptome	250	Y
F038646	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208160_10276521	F006619	N/A	LSEPTCSCGSFQRQLSNLSSFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSNGRFVLLYTNSGAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK
Ga0208160_10276522	F038646	N/A	MTDDILDYARQLVANQPMKLRDHHKYDLEIPSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKHITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQENFILTALRSACDSVLSDHDN
Ga0208160_10276525	F015987	N/A	MAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQAKRHHESQLRSLKSLLNYLRRVLPQDSNK