Basic Information | |
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Taxon OID | 3300025646 Open in IMG/M |
Scaffold ID | Ga0208161_1061212 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1156 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030088 | Metagenome | 186 | Y |
F047679 | Metagenome | 149 | N |
F082690 | Metagenome | 113 | N |
F103249 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208161_10612122 | F103249 | AGG | MKSFYHVLDYLYSKDPMRWQAMFVDIEVNKECLRGMREWLGAEWYEKVLLEDEYPEFAFMEDDGVILDMQHEMLAALN |
Ga0208161_10612123 | F030088 | N/A | MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKTYVPFSAMSVVFNSKGATKKFDKDLDSIVHPTRGKLFCLPKNVEQFVKVV |
Ga0208161_10612124 | F047679 | GGA | MKVIENSTAPIVADQEGDHYFFVGETVYYLNEFMKTLGNRDFDGVAHITNQGGIGIKIDEANEEVEYTIFTATY |
Ga0208161_10612125 | F082690 | N/A | MSKECVMCGGDAGEYGNNPAPLFNEGVCCDDCNMEVVMTRVMINRVGRNMEQ |
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