Scaffold Ga0208161_1039427

Overview

Basic Information

• Taxon OID: 3300025646
• Scaffold ID: Ga0208161_1039427
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1594
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F041644	Metagenome	159	Y
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208161_10394271	F041644	N/A	LGKYGEGEQVSLDFIIERLTSVQVGGFWALMQVLIYALVIYLGLVIISKITDKREREG
Ga0208161_10394273	F052570	GGAGG	MRKMKYKLPRGVKLEIDDYDAERKDRQDSAFYTWGDSHRVATLTYKEREYYVECVGEMRIIYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEVYDESSGEYTGEVYHEVKDAIETVANWIIAEKEEANV
Ga0208161_10394277	F002827	AGGAGG	VNKEYYQAKADLCRNLAIKQMVEGEAKEAGANLVRMVNALNQINLINYKEEKDNEID