Scaffold Ga0208161

Basic Information
Taxon OID	3300025646 Open in IMG/M
Scaffold ID	Ga0208161_1009629 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025646 Open in IMG/M

Scaffold ID

Ga0208161_1009629 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4101
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4101

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F025275	Metagenome	202	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F070055	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208161_10096291	F009699	N/A	PFWVELTAEDRPTLNIQGRDVPRCLYNLMITRRDVNLYLHGLKPHRGWKIGDVKAYFGLTGGKQKVADAINAMHDEFMGRFKEQDDAGQE
Ga0208161_100962910	F070055	GGA	MKGHPNEHLIHDDCRVEIEVVYKAFGMNDGMNVLVIDNDTDEVVLDEWEPDFEWAWETAKYYSKKYNLEIVDTIPY
Ga0208161_10096292	F032639	GAG	MLDKNKKLINEDGFYEGSELKWGMDDVRNVLERFGIASTTSREDVERVLIASFQDNFRLMEAIDEAIVDTIEYMINEGQLNTDE
Ga0208161_10096293	F029600	N/A	MKYWNGEGQYQDLFDKYWKELVPDRGEADTDAGNALRAIARINHDVFNNGAGNIVNESMEVDDDGEWYTLYEVERWWEKLFDDIYDYSRLDTDRLKRKIIESVQFDRDNGLSDMLDDYIDHIILKIDNQLVAK
Ga0208161_10096294	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDEAKAAKQKSLAGLMMAAHEEIQSTTDGMQDIIIFSDDEGESEILKIVELKPTFPENVSIREFFVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFNVETFHDFVNDLWYGGTAMFDADDLCVYYFRVPKPNQFTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208161_1009629

Overview

Ecosystem & Geography

Associated Families

Sequences