Scaffold Ga0208161_1004301

Overview

Basic Information

• Taxon OID: 3300025646
• Scaffold ID: Ga0208161_1004301
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6713
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F006109	Metagenome	381	Y
F010026	Metagenome / Metatranscriptome	309	Y
F025016	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208161_100430114	F006109	N/A	MTRYVVMVDNRWVTAVYGPGNGIGLTAAQDDASSWVTYERAVAAARVVAQCTNSPVAIHSVEEPSYPKSWK
Ga0208161_10043014	F010026	N/A	MAVKSKTALGRVDHKPGRPKKTRQGQGQHSVPNHNRKKMRGQGR
Ga0208161_10043017	F002867	AGG	MSVVHSTDFGHGYLLEQLENERGEIYYRACKDSICRYAEDEYIARMYLENMGWDPTADPQ
Ga0208161_10043019	F025016	GAG	MDPTTIATIAILAAAGSEILTLLPIRSNSWVQLLINVLNAVARKKS