Scaffold Ga0208643_1185627

Overview

Basic Information

• Taxon OID: 3300025645
• Scaffold ID: Ga0208643_1185627
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 502
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013362	Metagenome	272	Y
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208643_11856271	F013362	GAGG	MESYKQLILIILVAVIMFGYQWIKDEKKKHDYRKKYRKSQGWE
Ga0208643_11856273	F087744	AGG	MTKNILVTFDMTIGEYEHSNQYIFHNETTDYKYCKQFWGLRKKNKLKEGVYWDDQELNAISVYSAKEITDEQAKT