NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208643_1036950

Scaffold Ga0208643_1036950


Overview

Basic Information
Taxon OID3300025645 Open in IMG/M
Scaffold IDGa0208643_1036950 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1574
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F027481Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0208643_10369501F027481GAGGMSKKYLVKFNCIIGDYEHLDSYIFDKQMSEYQYCKKFWNLSKKNELKTNVFWDDFEMNAIEVYSETELTKKQYNELQ
Ga0208643_10369502F001702N/AMNKEQKQIKKVIDQAFSQLHVLSNITWTPYRDEIFDMNRKDEKRHRYNRPSSDFDASVNDCAKMFTVKHIAESLLNVEKWKVKDLINIRKSCLYSQSVVENYRDKILDAWKDQDLKQLANLEYIALIDWKHHTEILERRSA

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