Scaffold Ga0208643_1002183

Overview

Basic Information

• Taxon OID: 3300025645
• Scaffold ID: Ga0208643_1002183
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9977
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083934	Metagenome / Metatranscriptome	112	N
F102857	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208643_10021833	F083934	GGA	MGRTQEQISQSIQEIDDASFHLRKFAEKSHVPQDLAARITAMADLICILADDMEEHFDDHGDRVVEEDDYNAGFNEIMDADINSMLRALSIRG
Ga0208643_10021834	F102857	GGAG	MEVGLKEYVDKSPLNLNKISFMTGIGRPTMEYWIKQGQVFVETDDLGIIHKMIVRKADRVVWEAAKQAAK