Scaffold Ga0209833_1056240

Overview

Basic Information

• Taxon OID: 3300025641
• Scaffold ID: Ga0209833_1056240
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1299
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022202	Metagenome / Metatranscriptome	215	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209833_10562403	F022202	GAG	MKNKDQKILQNWIDTLQGISVRGMDSKVRLEARLLKKAWLEESKKIENKIPDQDPAFYQNIKEALKKKKDKTASK