Scaffold Ga0209833_1049262

Overview

Basic Information

• Taxon OID: 3300025641
• Scaffold ID: Ga0209833_1049262
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F025409	Metagenome	202	N
F099217	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209833_10492622	F025409	AGAAGG	MKVCKKQDYKNFTIVVYEQQANIEYPLNEDWENLDPEHLGTHAYKIFDEKKELVYEDKTSMWDIGACLDNAQQDIDCGAVQQTSEQKG
Ga0209833_10492624	F002928	AGG	MKNILVKFECQIGDYQHIDYMLFNKKKSEWGYCKEFWGISKKDELKENCFWDDWMQNAIKVYSETEITNEQVKTLKELGVIY
Ga0209833_10492626	F099217	N/A	MTKQTERLIAEMELEKKERTSERASIDFKFHYNTIGDCFYDIYCQPNSTKKEDLLKDMARILNGELTPEDFKTEILQWVSERSDECYLD