Scaffold Ga0209833_1007832

Overview

Basic Information

• Taxon OID: 3300025641
• Scaffold ID: Ga0209833_1007832
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5104
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010615	Metagenome / Metatranscriptome	301	Y
F032273	Metagenome / Metatranscriptome	180	Y
F060720	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209833_100783210	F060720	AGGA	MKDKKQSLSIEDRYWEIDFFTDKLRAAGKLMAEESITQDFCKDMQEEAIAALKAIYERAAAHRDYLKEIRDSVDAEEDRELTRIQEEAVKRLNKGIKELTSKLNK
Ga0209833_100783212	F010615	N/A	MQTIQLEGLELRPDKYFDVTVEAEAVTTQCESSSEVGESVVTEAWEERDLDEFEIVSLVYWPNDDTPVDLPTIVLTHDDRATIYEETLRYI
Ga0209833_10078323	F032273	GGAGG	MSTKGSGPRKGHNAEKQRKNYDDIDWSKKPLAPRTEQPKGSK