NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209833_1007671

Scaffold Ga0209833_1007671


Overview

Basic Information
Taxon OID3300025641 Open in IMG/M
Scaffold IDGa0209833_1007671 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5170
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006685Metagenome367N
F068778Metagenome124N
F071009Metagenome122N
F073484Metagenome120Y
F086945Metagenome110N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209833_100767111F086945N/AMSKFDINEEITDCPFDWSGIDHRAIADGWYHFWGNTQITSFETDKKGRYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY
Ga0209833_100767112F006685AGAAGGMTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVEDFIDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEEERFTLWDSKCKAGLGAWLLEEIRIETGLWVVDFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVANFKPYESSYQHAMSALNKLQK
Ga0209833_10076715F073484N/AMKIEQPSDNSLYVTIGNFTYYFDDSIDGEYFVNRWHKDDDDINDPELLQFRCFTNN
Ga0209833_10076716F068778N/AMSYLLGNKNIVNWGVFAEVEDSTDPELTQAVELVLPEHIQQEIYKLITDNIDQAKAIEAMAQF
Ga0209833_10076717F090089N/AMSVTYYLTDHNGNQIAFFYRVDNERYSTCPNILWACRQYPQFQGTASSKGEAIEAFKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENESNVCDECNPLTEDL
Ga0209833_10076718F071009N/AMTTDPENLPSLDDESLQALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ

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