Scaffold Ga0209833

Basic Information
Taxon OID	3300025641 Open in IMG/M
Scaffold ID	Ga0209833_1007671 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025641 Open in IMG/M

Scaffold ID

Ga0209833_1007671 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5170
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5170

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006685	Metagenome	367	N
F068778	Metagenome	124	N
F071009	Metagenome	122	N
F073484	Metagenome	120	Y
F086945	Metagenome	110	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209833_100767111	F086945	N/A	MSKFDINEEITDCPFDWSGIDHRAIADGWYHFWGNTQITSFETDKKGRYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY
Ga0209833_100767112	F006685	AGAAGG	MTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVEDFIDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEEERFTLWDSKCKAGLGAWLLEEIRIETGLWVVDFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVANFKPYESSYQHAMSALNKLQK
Ga0209833_10076715	F073484	N/A	MKIEQPSDNSLYVTIGNFTYYFDDSIDGEYFVNRWHKDDDDINDPELLQFRCFTNN
Ga0209833_10076716	F068778	N/A	MSYLLGNKNIVNWGVFAEVEDSTDPELTQAVELVLPEHIQQEIYKLITDNIDQAKAIEAMAQF
Ga0209833_10076717	F090089	N/A	MSVTYYLTDHNGNQIAFFYRVDNERYSTCPNILWACRQYPQFQGTASSKGEAIEAFKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENESNVCDECNPLTEDL
Ga0209833_10076718	F071009	N/A	MTTDPENLPSLDDESLQALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209833_1007671

Overview

Ecosystem & Geography

Associated Families

Sequences