Basic Information | |
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Taxon OID | 3300025641 Open in IMG/M |
Scaffold ID | Ga0209833_1007671 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5170 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006685 | Metagenome | 367 | N |
F068778 | Metagenome | 124 | N |
F071009 | Metagenome | 122 | N |
F073484 | Metagenome | 120 | Y |
F086945 | Metagenome | 110 | N |
F090089 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209833_100767111 | F086945 | N/A | MSKFDINEEITDCPFDWSGIDHRAIADGWYHFWGNTQITSFETDKKGRYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY |
Ga0209833_100767112 | F006685 | AGAAGG | MTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVEDFIDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEEERFTLWDSKCKAGLGAWLLEEIRIETGLWVVDFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVANFKPYESSYQHAMSALNKLQK |
Ga0209833_10076715 | F073484 | N/A | MKIEQPSDNSLYVTIGNFTYYFDDSIDGEYFVNRWHKDDDDINDPELLQFRCFTNN |
Ga0209833_10076716 | F068778 | N/A | MSYLLGNKNIVNWGVFAEVEDSTDPELTQAVELVLPEHIQQEIYKLITDNIDQAKAIEAMAQF |
Ga0209833_10076717 | F090089 | N/A | MSVTYYLTDHNGNQIAFFYRVDNERYSTCPNILWACRQYPQFQGTASSKGEAIEAFKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENESNVCDECNPLTEDL |
Ga0209833_10076718 | F071009 | N/A | MTTDPENLPSLDDESLQALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ |
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