Scaffold Ga0209198_1107986

Overview

Basic Information

• Taxon OID: 3300025640
• Scaffold ID: Ga0209198_1107986
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 850
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F031527	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209198_11079862	F031527	AGGAG	MKKQKNKMKTVYEYMTVLFAVVGTLSMVSAVGAIETDQWLLGGAAVSTGIASYIMSLFSQQLYSEAK
Ga0209198_11079863	F003514	GGAGG	MNLSTIAMSDIEKYNKLREQELILKAAKSGGAIESEILHGSLFVTFKSGSIMGYMLSKNLKYVLEKLLDNTTVKVYNTTNNEYAYDFI