Scaffold Ga0209198_1000484

Overview

Basic Information

• Taxon OID: 3300025640
• Scaffold ID: Ga0209198_1000484
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36234
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (92.98%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042352	Metagenome / Metatranscriptome	158	N
F049654	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209198_100048420	F049654	GAGG	MSKVGVFYVPADKMDQYWPTFGPMIELAQKRLADQCGMDDVEEWLRTGRSLLWGIYVDGKPMAAMMTAENTYPRKRVMVIEMIGGERADLWSKPALDELARVSKAAGFDAIETHARAGWSKMAKQYMFKLKHVAYELEL
Ga0209198_10004848	F042352	GGAG	MTDPLPLIDAVMQYLIVPAVVWLWMLHKTQSYHATDIAVLRAEANARDIARKEEREATAAQLDQILQMLQTINGRIDGMMSKGEK