Scaffold Ga0209136_1038796

Overview

Basic Information

• Taxon OID: 3300025636
• Scaffold ID: Ga0209136_1038796
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009608	Metagenome / Metatranscriptome	315	Y
F031424	Metagenome / Metatranscriptome	182	Y
F071304	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209136_10387961	F071304	GAG	MKKLKSKLLTYLFTDWVKTEEDVETLIMTKNMIEQRKNQIVGHTPILGFRMHGNSNIE
Ga0209136_10387962	F031424	N/A	MSKIPKIYKHGIEITKPWSKEMYEYNETVRAYMINEVKTVINMISDETTANKLAKIINPYGYGEGYSLEDMKADMLKNAECFENYWLTEIWDELIEADFVLPNFGEGNEVFHIIGFESKEEILELRAKFA
Ga0209136_10387964	F009608	N/A	MKYIKVYKDFLAEGRKQFQDTPNQLAYLDFKKWANKNRGDIKKRLDTINDGSLFFVELKKIWMDWANKNAKEWSYLHSTPVAEKDFGRALASMLKSDDVIIQKSGNKITSLK