Scaffold Ga0209136_1030046

Overview

Basic Information

• Taxon OID: 3300025636
• Scaffold ID: Ga0209136_1030046
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2038
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009303	Metagenome / Metatranscriptome	320	Y
F025005	Metagenome / Metatranscriptome	203	N
F061769	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209136_10300461	F009303	N/A	RQVESTGRTLEVGGVMLNVLKWVATATLIVGFGFFSAGYGFGWYLQITGGFLWLIAGIMMKDNPIIATNALMSTVGIIGRLFG
Ga0209136_10300462	F025005	AGGAG	MNKAEINFFYDKNEDWESTYNNQNFFEYNLHRMRYLVVDTELDNNPFEGCVDLETLEVKNQLSFDRLKQYTLEDLLKLGEVNEWDWIGDDFEHMWQYLGFIADHDKTFMYNTRIMGEDEYMHIYGYNIPEKYQQGALREAYLAGQADAEKGLS
Ga0209136_10300466	F061769	GGAGG	MLKLAYCDKIADAIRKALIKSDPDGIIGPVGPIQWDLHPTKGYFISPKKAMTVHDMNGKAYVVTIEEAPMLDVDVETKLEESA