Scaffold Ga0209136_1013978

Overview

Basic Information

• Taxon OID: 3300025636
• Scaffold ID: Ga0209136_1013978
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3442
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F064106	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209136_10139785	F001588	AGGAG	MQNTNYVFLNAADAAIVVTVNNTVVGAAYTAAQLAALFTANNVNVSTDTIMCSSSIDFAQEEGFDTDDCAHALIDSALAQL
Ga0209136_10139787	F064106	AGGAG	MQNTVTQAQALQHCAQQLEYVTDSANKHTLCLDTASELVAVMQQLLDSTTTNYAAIVANTRYSNDEVNENKYL