Scaffold Ga0209136_1001082

Overview

Basic Information

• Taxon OID: 3300025636
• Scaffold ID: Ga0209136_1001082
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18399
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209136_100108219	F006322	N/A	MGAKRNKKGDVVTGRGSELTTLQSEFLERVANEGMEASAKIARDLNYTSYYRDRRNQGTAFHKELMMLANQEMKSIEAAKGTNLSALIKIRDLALAEGDMKAAMESIKIINDMQGYKAPTKVQQTKVDITATIDLTAPPEEQDYLDIDAD
Ga0209136_100108220	F010877	N/A	MTTKQLLIALTASGLPKGDVKDEMFKFYNSKVGTSRYFTKQENPRTACGSCIQRVKTNIWKWYHSDEKAPTYKGLVYTNKNVAYNMPQYIYEDGSKEK
Ga0209136_10010829	F004461	N/A	MSVTISNLPYGDRRPNLFIDSMVKSAAVLNRFRLVDGVKNKVNVPIFDGALQFGNDLCVFDGASTASIAEKEMTVDTYKWSFLNCKNALETSYRGLLLKKGQHNPETMDAEFKDWVFDFFAKKSAEHALRLAATELTLEMGQDAAVIDTLIGGGALTPLNILDEMGAAYAAMSDVMLAAVYGDADRDFKPAFFMGTAAMQHYQVAIAEKYTTTPQGIVEGNIPAYFGMEVVHFPSLGADQFFVSAPQNIVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKIGFSYLKGEEIVYAQA