NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1001213

Scaffold Ga0208147_1001213


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1001213 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8526
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F007260Metagenome / Metatranscriptome354N
F013879Metagenome / Metatranscriptome267N
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0208147_100121310F013879GGAMLRMYILLPPKSPQAARNRVLDYFNRPIGEARIDRRTGKRVGRSRQLRLVHLIAQAKNRKEGKPGLYGREMRLAAASLRRRAAGSVGYLKSAVVKAIKKLSPSFQQFGGTRRAKKGSAQVRIVSGNQALINLANQYGLPQENVSVHRGSSAYAYWARPSINPYTHVRMNIGLADNQIGNVESIYSKAMQKAYDDEAREMSLHIQAKLEQAADGLEKLGVVVK
Ga0208147_100121311F007260N/AVNLIATSLQLGMSVLQGAMGNPSFIWQGQLVRCLPAAITDTNSVISGGFQDNVQARILVKLSDWRLADSTLVTVDATVWSADVGSNADRLLQENGSLILQENTDRLLTTFGRMIPVVGRLVTYDGRQLRIMSAKRDGSGAYYALELGAKTK
Ga0208147_100121317F001272N/AMIHIELTQEQANSLLQLIDIAVKAGGIQNAKVGLPLVEIIIQAAQPKPE
Ga0208147_10012138F023575N/AMATSKGLGLVYGSKGTIRLYNQTGAAPGTALSGVITTIESYDVTHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSGTDFAAAKTAASLPAVNGYVTIASTDATTYGGVSLDGDYVYSGGGSVKFTSSGKCMVTITVTKYPSLGGTATVFTL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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