Scaffold Ga0208147_1001104

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1001104
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8966
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019115	Metagenome	231	Y
F021292	Metagenome	219	N
F022633	Metagenome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100110415	F019115	N/A	MNDIEFVFEIETEEGWFSVPMHFSAHEWFDDDSGDIPAVHYTDTGFDERQKDIIHDLIRMKGTEHDGGLLSEMQKAADWWKSHQGPDSVWHDYFTND
Ga0208147_10011043	F022633	N/A	MKEFLNSIGINIGLTIAGFLGSLLLLPKQKNWKMQLVSVFSGSLCATYLAPVLIGFLKIDAPNIQYGLAFLVGFSGVKIAEVLEAKLLKTLNATPSQADSAEHTPD
Ga0208147_10011047	F021292	N/A	MKHDIIAHTPITLDNGKVLDAYIHKQPSGMYALHVNYIFEANSNSTRTKQIAEALWRKQHRDWFRFIRFQRSSTPLPMPKLNNQ