Scaffold Ga0208147_1000934

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000934
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9767
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F006659	Metagenome / Metatranscriptome	367	Y
F040619	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_10009341	F040619	N/A	RIMTGDICSAKTAIESKRMEKLLNHYHESLSEDGACKISLQAYAAAGGWVGITYSYEVDGFEIAGSQVPRRV
Ga0208147_100093411	F001338	N/A	MNPPNNDRPPLKSIEVSGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKTLAMLVGKFAGKFTEEIRLDATPAEFLQYIEPACGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVSEPPPENPPF
Ga0208147_100093413	F002413	N/A	MPAPTLVLIAGYARTGKSTLASGILEWATRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRLDRDVFARHFANWCPVMKHADQPSPETVVCSDWRYVNELRVCQDILWEKGWRVRTIYVATAGVGPANDEELDSISEIRASHLFDQEYIFKPNARNQIMTEGRNLAKSWRL
Ga0208147_10009345	F006659	N/A	MKKDSKPSPDYRIIADSSYILLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAATEQASK
Ga0208147_10009348	F002038	N/A	MADVPKGIERIAATVRNQYALLLLLDGYPYVELTARKHADFLTDLNAWKRKTYPSLIRSQVRYFTLAPNGEIKELTFTPVRQ