Scaffold Ga0208147_1000726

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000726
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11141
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100072611	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDSEVAGIYLRDDDCLVVRRDGSEQAYNRELIKVAFTNYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSHAKLQAHWADKFIHVSDTNKVLHLLQSNQTDLGHLVAPDGLRLTNRPIDFDSDMEADQSEPVVAEPWCSCGSYQRQLSNLSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPVDHISNGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ
Ga0208147_100072613	F043890	N/A	MQKTSSWATCNPNSIEKLQINCVDEEDGSMTIYIEWNEKDPDLQWWTDLGPKDQECFMIDALHKACACYVD
Ga0208147_100072614	F002738	N/A	MSIDTYGLSTEQYQEFFEDNVRFAAELYLQTCNILTAKGVGSVDFKTVLDMYQETVYATNDDCRRYQKANNPAALKNNDPYAILTPSREELMEEIQSVNAKVEELTNYINQFISITTKGLEALVD
Ga0208147_100072616	F001018	N/A	MAQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELEACAFLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTTERELYCIEETVTTTKQVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVKQEYSVRSKRIFGKPELDLVSSEYPGELLPEDSSAD
Ga0208147_100072617	F025982	N/A	MDDARIKMSCHDHAIKDFDLQLEMNSLQLDMLKENGEVMPYHVDEYGDLEEKKLKLLVGKRFHQNASNAYWYWMQRDKATK
Ga0208147_10007263	F002985	N/A	MSYVIACWRWGTPHAITANQETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINNNDEDLACKELSIQDESRFRK
Ga0208147_10007269	F097198	AGTAG	LKHLNPMLQFEMGPEEAFWQEKMIRSINECNSISELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNQLKG