Scaffold Ga0208147_1000207

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000207
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21484
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F002356	Metagenome / Metatranscriptome	567	N
F009057	Metagenome / Metatranscriptome	323	Y
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100020715	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLADGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHQVEGVGTIKTEGGKITEVVVAEAPAPAEEVEVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKEKMASFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAAQNFAAIAQSIQTLKNSK
Ga0208147_100020718	F020667	N/A	MSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPNNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPNSGHVSGTWTASGSASSGYVYGIVDAVGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFTEAGFRYSSNFFNSSLFNKLVIPYAAGTMPVNLSGSNIFAQATGNSASFIENANQTLAFPKDTPAPYYDNPGYWVASSSTFVAPALPTRWNVDVTLSVSGSFVQTINQFRCNMSIRNITNSEDIAVITGIPADINKQFTVRFENITVPANITANIGFVITADTFSLTQNFRVVSGATMQWTCLENPLGIGVLDMRTAIPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGTVDWSQKSDENAEQILTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITGQSPWFYWYGVEEDGFATVAATNALPFISHIDNPYAPSVDLAFGQPRLVYYNAVNASGSPFAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATSTTPIANDPSALFNGPIDPDPVDPGYEPPINPELPSEG
Ga0208147_100020719	F021095	N/A	MSITVLSGSLLVATPVFNKMLYKVSGSLIAQPNFRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQRVVETLVSPTKPSLTQTGFVDHSGFYSGYRLDFTQEYGSTPVVTGATTTVSGVMAFAGNLEQLELADWSLTSYFRIGSSFTNVRPLTTPTAFTVYQGGKNFLAINGTKYETIVPTADWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWMTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIELAVAYDNNIL
Ga0208147_100020722	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSRHLTKGMQAP
Ga0208147_10002073	F009057	N/A	MPTFRKFAFPDGATADKVLQDLQPLDFAVPLGELDGLVCYDILFQDACPASLNAYIVWPAPCGVHSFLGWDEQYAIDWEAHRNESKQEAE
Ga0208147_10002076	F001129	N/A	MLGQGGSMRFVDAAVSGQVFDFIVVNAAATFTTLTGSGGEDLLTAYALSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0208147_10002077	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIIYPLVFADVQSASTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSVCEIPT