Scaffold Ga0208147_1000116

Overview

Basic Information

• Taxon OID: 3300025635
• Scaffold ID: Ga0208147_1000116
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31613
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.18%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F002356	Metagenome / Metatranscriptome	567	N
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F006105	Metagenome / Metatranscriptome	381	Y
F006621	Metagenome / Metatranscriptome	368	Y
F007748	Metagenome / Metatranscriptome	345	N
F012449	Metagenome / Metatranscriptome	280	Y
F024098	Metagenome	207	Y
F088549	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_100011613	F002356	N/A	MNLKAAIDTLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHEVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEITEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAAQNFAAIAQSIQTLKNSK
Ga0208147_100011617	F024098	N/A	MAISVLSGSPQSATPVFNKMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGTYFPPAPLTANTGKSLTTTQDGTSVSNAIAVVYADSYGYLCYGKGSANTTNAVRVRYRDASNAVTREFFVSEGAASGSTIVRFGSGPMNLNALTSAQCSDGLAGSASFPITEGAGYSIEPIDTLNTGLPYYPVYYRLGPCQRFDSVPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0208147_100011620	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPALGYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0208147_100011623	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPEQRKLVKEILENSLVAAKVKVVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMIFFNIVAWERAIAELEKADAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF
Ga0208147_100011628	F006621	GAG	LANSTKVDPEAQVQARMDSLMMVITTLCDCIGAVEESNAPNAFAVKMKIVDKIDELIDKIEY
Ga0208147_100011631	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQWWYRTWLARNKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQLTNR
Ga0208147_100011645	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLIHRIEEGEVNPIAAHVRLKAVVKALEQVLKSTEDIVRDEAEKHGKTFSAFGSEIQIKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKATVYDEATGEVVPVCPAKGTKPSIAVTFKTT
Ga0208147_10001165	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQIPYSHSVCEIPT
Ga0208147_100011653	F007748	N/A	VNLIETTIIGTVSAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIESLENTIQQLEAENANLKSLQ
Ga0208147_100011655	F088549	N/A	ADFRTIYDAEASQNTCVELGRINPDNPKAFCVDILWEGEEPSHWVRHQVWPKPCGVHSFLGWDAQYEADYQEFATPQSK
Ga0208147_10001169	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSNYTERYDKFSLTVGQVETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTFANSIQYNVYGASAVSIFDSTFDQTFQ