NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208589_1085077

Scaffold Ga0208589_1085077


Overview

Basic Information
Taxon OID3300025634 Open in IMG/M
Scaffold IDGa0208589_1085077 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)756
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F003382Metagenome / Metatranscriptome490Y

Sequences

Protein IDFamilyRBSSequence
Ga0208589_10850772F001426N/AMRPWTPQTLYDAKPWAFIGIGVMLAVGMMLWSMSAGLWTVWRGLLCLGGAALAVVGGATLQLRQDYRARSKWRRDAPP
Ga0208589_10850773F003382N/AMMRRLFGRLGLTSAWSVEVAAAVLALLGGLALMPLLIFYAGVGSLGRYEGAGLGHLYDSFFAGLRQASMASWVVLLGPYGLYLLFKGLRTWWRASARLAD

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