Basic Information | |
---|---|
Taxon OID | 3300025633 Open in IMG/M |
Scaffold ID | Ga0208480_1047536 Open in IMG/M |
Source Dataset Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1130 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018973 | Metagenome / Metatranscriptome | 232 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208480_10475361 | F018973 | AGG | MRLSAVAIGLLMLLSACGTPSAIKPVEYLDDRTAMTVGSLKEPIELVPSLRQGGLHVITNLGKRLSFAYLGPVEWDRSGSIVYGLWVHIAPGTDRPIADIRSNAALTIVLDNGTRVLTPIDAPQLGRGAYQPVASWGQTAYFELTVEMLKQMAASEKLELDVRAADNSVVNFVATGDTRE |
⦗Top⦘ |