Basic Information | |
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Taxon OID | 3300025633 Open in IMG/M |
Scaffold ID | Ga0208480_1000451 Open in IMG/M |
Source Dataset Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15704 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025793 | Metagenome / Metatranscriptome | 200 | Y |
F027915 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208480_10004514 | F027915 | AGG | MPKDRTRRRFLASDVQLVVERSSEHPVEYAIVLLVLRDGRWRTVRTFDNAHDPSEHHEHVYVGLEKQPPIVTYGPVNDAMYAAELKLLREWRDIVHGWEYLQ |
Ga0208480_10004515 | F025793 | GGAG | MSEITHKTDVLFMAASRSDDDLGYPADVAFIPSDEEWTDDVLWRNLIEGQATVLVGEDTELLLVPLRRGVIDRLTGRVPVSVAPRTHGHASSYATLSRLGRHPVRQMRALAHA |
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