Scaffold Ga0209194_1042289

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1042289
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1355
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F004856	Metagenome / Metatranscriptome	421	Y
F015812	Metagenome / Metatranscriptome	252	Y
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10422892	F106085	AGG	MTNNPLESLRKKLSFLLDNLKNKFIMLIKSKQNNKIIINKDIKNNIPKHLKGLNNKQLKDLQSLFKMRI
Ga0209194_10422893	F015812	AGGAGG	MSKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRVEEHLSHMVSRSLADTHIGTTHD
Ga0209194_10422896	F004856	GGAGG	MNVDSDKPKYIEARYSAYLSWDLEELGIDWDEIEDWDLLRADLHITFKDGTEKTYENWQDLDIDYKHNFEEVLILDENWGKVEGLN
Ga0209194_10422897	F003976	N/A	LYREYEYEKECVLHTLDKLEMSVRFLNVWVNEPMGLENAKYVLEKNSNRTYDLLDINMVKELVEEEVR