Scaffold Ga0209194_1019804

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1019804
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2326
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033765	Metagenome	176	N
F052939	Metagenome	142	Y
F062256	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10198044	F033765	GAGG	MKSLLRTILDECEKNKLMYRANAYDLADNGCEDMIVPWGYDFKALVETMSEFELDEMRGNIQILPESKVKTHAELIDSIRSDLLEYSYEDEERILIKSLTDEQLIEERPDEYYSGYYWIMWTNYGGNEHLDCFTDYTTGLDKYFDVSKLTNEWEDEYNKFKLGLI
Ga0209194_10198045	F052939	GGAG	MNIEQKIIEQIFDTLMKNDYPENFNFATDLRYDHWLDTNPDNPTISLVVEKKGIPTTYKISINEVKNEIIT
Ga0209194_10198046	F062256	N/A	MLCFLINFGEVKQMNINPKQNEIYAKRSVNIGDASIDIDILIPDKLAKHGWRTMLLPMDFYDPHTRLGKMLNKAIADYLTESDDYVVCGMNKDGSLK